FWIW, here's my revised list file entries for the part of US 501 in NC north of Raleigh. I had previously clinched everything north of Raleigh, as you had, so these should work for you (other than substituting "SC/NC" for "I-40", since you covered the whole route in NC):
NC US501 I-40 MainSt
NC US501 BosRd NC/VA
I agree that updates entry could've been clearer, though it usually isn't necessary to provide waypoint names for the deleted segment.